PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_82DEC629B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 161aa    MW: 17878.2 Da    PI: 9.5247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_82DEC629B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.5e-222762287
                           H.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3 22 faeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                           +ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +  
  Traes_3AS_82DEC629B.1  2 HAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCSAY 76
                           56666665554444334458899***********************************************96543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-25195IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015189IPR003340B3 DNA binding domain
CDDcd100177.27E-18171No hitNo description
PROSITE profilePS5086312.167190IPR003340B3 DNA binding domain
PfamPF023627.9E-20276IPR003340B3 DNA binding domain
SuperFamilySSF1019365.62E-20287IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
QHAEKHFPLK RTPETTTTTG KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE  60
KGLGAGDSIV FSCSAYGQEK QFFIDCKKNK TMASCPADGG XXXXPPVAEA ANGEQVRVVR  120
LFGVDIAGEK RGRVAQAEQE LFKRQCVAHS QHSPALGAFV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3319934130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720821e-127AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693577.13e-62PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ0DXB13e-62Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
SwissprotQ9AWS01e-61Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLW5CLF31e-114W5CLF3_WHEAT; Uncharacterized protein
STRINGMLOC_7940.11e-100(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-36related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]